PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01001783001

Common Name

VIT_18s0001g03010

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 273aa MW: 30939.1 Da PI: 8.2071

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01001783001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.9	1.8e-07	150	192	17	59
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 A+rsR+RK+++i+eLe v++L+ae + +e l ++ l GSVIVT01001783001 150 AQRSRLRKLQYIAELEMSVQVLQAEGCEISAAVEYLDQHNLIL 192 789**********************877777777776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	3.73E-12	142	189	No hit	No description
SuperFamily	SSF57959	6.12E-5	150	192	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-5	150	191	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009029	anatomy	stamen
PO:0009032	anatomy	petal

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MQRGHRRSAS DSLAYLGAVA KVSNTNEDHK FKNSFAWPSF GSLCNASTYT RPSSFDENQN 60 RAWESSLNCL NYTSDLPLTR DQPNIINVQV SGSCAPPDQP DGVPPIATKK QDCAESISHN 120 QEDSSERSDS SSAQPSLSKN DAKRAKQQFA QRSRLRKLQY IAELEMSVQV LQAEGCEISA 180 AVEYLDQHNL ILGMKNRALQ QRLESSSQEY LIKQLEQDML EREIRRLQIL YQQQQQQQQQ 240 QQQQQQQQQF SGHRRAKSRN LDSPFSNTSV KT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM452086	0.0	AM452086.2 Vitis vinifera contig VV78X159888.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645834.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g06598
TrEMBL	D7TYG4	0.0	D7TYG4_VITVI; Uncharacterized protein
STRING	VIT_18s0001g03010.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	6e-42	bZIP family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01001783001