PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000606001
Common NameLOC100262842, VIT_01s0137g00050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 304aa    MW: 33977.9 Da    PI: 6.7334
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000606001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1048.7e-331972255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+
  GSVIVT01000606001 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8671575IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-321575IPR009057Homeodomain-like
SuperFamilySSF466895.91E-161774IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-241973IPR006447Myb domain, plants
PfamPF002498.1E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGSCGRNGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QLMDVRGLTI  60
SHVKSHLQMY RSMKSDIGRQ DRSSTQQRKQ SFEDHDGCVD EETGDVGFHP PLKSIEESDS  120
QFIYSPLRAK RARIETMSSI SENLQCSQRI CETVATPYSF DDYLAEKRGI KEGGGFRWQT  180
QAPSPAFPLP HDLYNLNPFG YAAEESDFLK IAKLEDQKHA VAQMNKNEDN ERRPADGEEA  240
GGCGLSLSLS LHHPSTQRSN ASSTSEISEA FSSYPRSNFK DSFGSYSEER SINLDLSIAL  300
CGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4524291e-150AM452429.2 Vitis vinifera contig VV78X021201.18, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281928.10.0PREDICTED: myb family transcription factor APL
TrEMBLD7SMG80.0D7SMG8_VITVI; Uncharacterized protein
STRINGVIT_01s0137g00050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-33G2-like family protein