PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01000606001 | ||||||||
Common Name | LOC100262842, VIT_01s0137g00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 304aa MW: 33977.9 Da PI: 6.7334 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104 | 8.7e-33 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ GSVIVT01000606001 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.867 | 15 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-32 | 15 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-16 | 17 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-24 | 19 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGSCGRNGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RSMKSDIGRQ DRSSTQQRKQ SFEDHDGCVD EETGDVGFHP PLKSIEESDS 120 QFIYSPLRAK RARIETMSSI SENLQCSQRI CETVATPYSF DDYLAEKRGI KEGGGFRWQT 180 QAPSPAFPLP HDLYNLNPFG YAAEESDFLK IAKLEDQKHA VAQMNKNEDN ERRPADGEEA 240 GGCGLSLSLS LHHPSTQRSN ASSTSEISEA FSSYPRSNFK DSFGSYSEER SINLDLSIAL 300 CGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452429 | 1e-150 | AM452429.2 Vitis vinifera contig VV78X021201.18, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281928.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
TrEMBL | D7SMG8 | 0.0 | D7SMG8_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0137g00050.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01000606001 |
Entrez Gene | 100262842 |