PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01000232001 | ||||||||
Common Name | VIT_07s0130g00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30485.1 Da PI: 9.3595 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl GSVIVT01000232001 14 KGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +G++ W++Ia +++ gRt++++k++w+++ GSVIVT01000232001 67 RGNFTDEEDELIINLHSFFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.47 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.74E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.04 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.98E-12 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-28 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDQRLIAYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIN LHSFFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLS SAASTAATSA TINNSKRSNS TSKNTSNSES EAAKTPPYSN SSSGVTTEEL 180 YPQLNLELSI GLPHRPQIQA TNVKEPKKQP QEQLPFQFFG ASSASTKNHQ SSCFCQNLGY 240 QNKTQECNCK SVTRMIPADD LYRYYTALDS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 5e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM447361 | 1e-174 | AM447361.2 Vitis vinifera contig VV78X015601.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019076420.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81395 | 7e-96 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A438KKB0 | 0.0 | A0A438KKB0_VITVI; Myb-related protein 330 | ||||
TrEMBL | F6HGI1 | 0.0 | F6HGI1_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0130g00040.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-87 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01000232001 |
Publications ? help Back to Top | |||
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