PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP28610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 301aa    MW: 34003.4 Da    PI: 9.3804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP28610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.94e-36461881128
                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 
                                    +p+G++F+Ptd+el+ e+L++kv++++      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+
  GSMUA_AchrUn_randomP28610_001  46 MPAGVKFDPTDQELI-EHLEAKVKAQDlrshplIDEFIpTIEGEdGICYTHPEKLP-GVRRDGLSKHFFHRPSKAYTTGT 123
                                    699************.99*********6665443333333666646**********.566677799************** PP

                            NAM  73 rknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    rk+r+          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSMUA_AchrUn_randomP28610_001 124 RKRRKiqsecdlhRGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188
                                    ****85666665433788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-3841207IPR003441NAC domain
PROSITE profilePS5100532.07446207IPR003441NAC domain
PfamPF023659.5E-1747188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNTSPIGSVS SSSLIDAKLE EQRVGVSEQC PRCGHKLDRK PDWVGMPAGV KFDPTDQELI  60
EHLEAKVKAQ DLRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVRRDGLSKH FFHRPSKAYT  120
TGTRKRRKIQ SECDLHRGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGE FEDEKEGELV VSKIFYQTQP RQCNWSSDRS PAAAAAAAME GMDQRRDGRS  240
GSSCSKAASK RDEHSSGGGG ISGYSSMEMH QHLKPDNFSF APFRESYSEV ISRNKGLIRF  300
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-124418813140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422274e-39AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankJQ0880964e-39JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676655.10.0PREDICTED: NAC domain-containing protein 73-like isoform X2
SwissprotQ9M0F81e-132NAC75_ARATH; NAC domain-containing protein 75
TrEMBLM0UD690.0M0UD69_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP28610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-130NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]