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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP26940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20333.5 Da PI: 9.9994 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.4e-17 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +grWvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g GSMUA_AchrUn_randomP26940_001 38 PYRGVRMRK-WGRWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVYYLRG 87 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.8E-35 | 38 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 38 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.774 | 38 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.52E-26 | 39 | 96 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-21 | 39 | 97 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.8E-11 | 39 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 77 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEGQCCSTST SEDTRKSPPP AVGQRAAASG GGGSRERPYR GVRMRKWGRW VAEIREPNKR 60 SRIWLGSYST AVAAARAYDT AVYYLRGRSA RLNFPDEILA EDVDGEGFGV SGVASMSAAS 120 IRKKATEVGA RVDALQTGLT SRPSPHLRQQ RGHHQHQLEQ QQLPSRRAMN PDLNQEPSPE 180 DSDKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 31 | 97 | 7 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387797.1 | 1e-134 | PREDICTED: ethylene-responsive transcription factor RAP2-9-like | ||||
Swissprot | O22174 | 2e-44 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | M0UCQ2 | 1e-133 | M0UCQ2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP26940_001 | 1e-134 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 1e-27 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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