PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP23710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 232aa    MW: 25324.3 Da    PI: 6.293
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP23710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.45e-3871071100
                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                    +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn +kll  lp  +r++a+ ++ yeA+ar++dPvyG+v++
  GSMUA_AchrUn_randomP23710_001   7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNFSKLLLLLPLADRSEAAVTISYEAQARLQDPVYGCVAH 86 
                                    7*************************89**************************************************** PP

                         DUF260  80 ilklqqqleqlkaelallkee 100
                                    i++lqqq+ +l+a+la+lk++
  GSMUA_AchrUn_randomP23710_001  87 IFALQQQVVNLQAQLASLKAQ 107
                                    ****************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5256108IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNFS KLLLLLPLAD  60
RSEAAVTISY EAQARLQDPV YGCVAHIFAL QQQVVNLQAQ LASLKAQAAQ GLGSGSATNQ  120
TPQEDKHSPF QQDGQRFFQT GDGRMLPPFS SISSMSVENM NNYSSGPSDP NYLQSSQEYD  180
RHYEISDDHM SFGTEGGGFA MASPDMQAST WRSAYHDMED LQSIALAYLG RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3331017104LOB family transfactor Ramosa2.1
5ly0_B1e-3331017104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388133.11e-174PREDICTED: LOB domain-containing protein 29-like
SwissprotQ5UG139e-71LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLM0UBS91e-173M0UBS9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP23710_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.16e-47LBD family protein
Publications ? help Back to Top
  1. Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]