PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP23560_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27390.1 Da PI: 10.3144 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.5e-10 | 100 | 147 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri+++++ Lr l+P + +k Ka +L + ++Y++ Lq GSMUA_AchrUn_randomP23560_001 100 SHSRAERVRRERIRERMDLLRGLVPGC----DKNTGKAVMLDEIINYVQFLQ 147 89************************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-18 | 94 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.466 | 96 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-16 | 97 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 100 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-11 | 102 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNSSSVMVDP RGGRGVAPTP RSSMEKKRKK RDLTTALRTS TVLDCSSNVS CHQGAERNVR 60 KRNKHAEEKK KKKKKDDEAD NGEGRGYIHV RARRGEATDS HSRAERVRRE RIRERMDLLR 120 GLVPGCDKNT GKAVMLDEII NYVQFLQNQV EFLSMKLASM NPIFYDLERF ESSALQTSPF 180 HQAAPEGASR SYTMKEASTP LLLHDQGPIS LPQEHGSVVV KVADRRQELL HQVVFNNVCS 240 FQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 28 | PRSSMEKKRK |
2 | 25 | 29 | KKRKK |
3 | 59 | 74 | RKRNKHAEEKKKKKKK |
4 | 68 | 74 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018677521.1 | 0.0 | PREDICTED: transcription factor bHLH137-like | ||||
TrEMBL | M0UBR4 | 1e-180 | M0UBR4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP23560_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-31 | bHLH family protein |