![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_AchrUn_randomP20320_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 327aa MW: 37186.1 Da PI: 8.4814 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.2e-05 | 214 | 236 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ GSMUA_AchrUn_randomP20320_001 214 FMCRKCGKAFAVRGDWRTHEKNC 236 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-6 | 130 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.48 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.494 | 130 | 157 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.49E-7 | 130 | 152 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.49E-7 | 209 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-6 | 210 | 234 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 214 | 234 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MADSDRYSNL FKGSLNHYGF PSHTSATHSL YAAFTNYTYV QSSPASPPLR EALPLLSLSP 60 TRHGHQQEED SNWLSRGDSV EEEAVSVALH IGLPSPREAD LVSRVSSTSL TRGQYWIPTP 120 SQILIGPTQF PCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLKGTQPTG MLRLPCYCCA 180 PGCRSNIDHP RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW 240 YCICGSDFKH KRSLKDHIKA FGRGHAPYGL DCFDEEDEPS SEIEQDSDHH HQVKQLDERF 300 IVSDTRINVD AGLLMLSYLM FFVGRTQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387719.1 | 0.0 | PREDICTED: zinc finger protein WIP2-like | ||||
Swissprot | Q8W031 | 1e-127 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | M0UAU1 | 0.0 | M0UAU1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP20320_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51220.1 | 1e-129 | WIP domain protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|