PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP17360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 327aa    MW: 36854.8 Da    PI: 7.5287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP17360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.1e-5371351128
                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                                    lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++Pw+Lp+k+  +++ewyfFs+rd+ky++g r+nra++s
  GSMUA_AchrUn_randomP17360_001   7 LPPGFRFHPTDEELILHYLRNRASSMPCPV-SIIAEVDIYKFDPWELPAKALFGDREWYFFSPRDRKYPNGVRPNRAAAS 85 
                                    79****************************.89***************888889************************** PP

                            NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                    gyWkatg+dk+++++   + ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  GSMUA_AchrUn_randomP17360_001  86 GYWKATGTDKPIVASkgMSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 135
                                    *************98555566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-635167IPR003441NAC domain
PROSITE profilePS5100561.0617167IPR003441NAC domain
PfamPF023654.3E-278135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSNPTSLPPG FRFHPTDEEL ILHYLRNRAS SMPCPVSIIA EVDIYKFDPW ELPAKALFGD  60
REWYFFSPRD RKYPNGVRPN RAAASGYWKA TGTDKPIVAS KGMSDNIGVK KALVFYKGKP  120
PKGVKTDWIM HEYRLAEALR SNNYQTIKLR GSSMRLDDWV LCRIYKKSNH QLPLDAEQED  180
TGVEAASPHS MQQNGFLKLP KSYSLTELLD AADYSTLARL LENPPDVLGS QNCSINYPDS  240
NPSFVPHCNQ AELPVPIKDN VLKRKQIVNS SCFEEDDEFS FPAKKPTVPR TFDNTAFDSL  300
PYSLLLSSDL GLQLGHSAQQ AKAAYEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-72617014171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387374.10.0PREDICTED: NAC transcription factor 29-like
SwissprotK4BNG72e-89NAP2_SOLLC; NAC domain-containing protein 2
SwissprotQ84TD67e-89NAC47_ARATH; NAC transcription factor 47
TrEMBLM0U9Z50.0M0U9Z5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP17360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-91NAC domain containing protein 47
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]