PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 194aa MW: 22154.4 Da PI: 10.3931

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP16400_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6.1e-17	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d+++++G g+W++ ++ g+ R++++c++rw +yl GSMUA_AchrUn_randomP16400_001 12 RGAWSKEEDRKLIDYIRLHGEGCWRSLPKAAGLLRCGESCRLRWINYL 59 89****************************99**********97 PP
2	Myb_DNA-binding	51.1	3.1e-16	65	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_AchrUn_randomP16400_001 65 RGNFKEDEADLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 110 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-22	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.418	7	59	IPR017930	Myb domain
SuperFamily	SSF46689	3.52E-27	10	106	IPR009057	Homeodomain-like
SMART	SM00717	6.7E-14	11	61	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	12	59	IPR001005	SANT/Myb domain
CDD	cd00167	3.57E-11	14	59	No hit	No description
PROSITE profile	PS51294	26.071	60	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-25	63	115	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-15	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	65	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.90E-10	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRNPCDKRGT NRGAWSKEED RKLIDYIRLH GEGCWRSLPK AAGLLRCGES CRLRWINYLR 60 PDVKRGNFKE DEADLIIKLH ALLGNRWSLI AGRLPGRTDN EVKNYWNSHL RKKLKSMGVD 120 PDNHRLTQKA PLRRSRSSHS ASLSTDAVTS HENMKKCSST VLPDLNLDLT ICTPSSLEGQ 180 RLDRTATPTL LLFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-27	11	114	26	128	MYB TRANSFORMING PROTEIN
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	115	LRKKLKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387271.1	1e-141	PREDICTED: myb-related protein 308-like
Swissprot	P81393	2e-71	MYB08_ANTMA; Myb-related protein 308
TrEMBL	M0U9P9	1e-139	M0U9P9_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP16400_001	1e-140	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-70	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]