PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP15160_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 325aa MW: 35522.4 Da PI: 7.1872

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP15160_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.2e-32	155	208	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk+ilelm+vk+Ltl+hvkSHLQ+YR+ GSMUA_AchrUn_randomP15160_001 155 PRMRWTSSLHARFVHAVELLGGHERATPKSILELMDVKDLTLAHVKSHLQMYRT 208 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-29	152	209	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-16	152	209	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	155	209	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	156	207	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSLQEIVSET NPTASPDLSL HIGPPCVVPS SLSNADSVSR VSSEANIHQR FRGPPPQVND 60 DRNPKSGLVQ QGFSSFLSSS SSSSNGYSNN VYLMGSYLQP PNGSQPSVSS YQWTPQLPPP 120 TWIAGLYRHL PCGVGSLSRS GFMPRYPTKR STRAPRMRWT SSLHARFVHA VELLGGHERA 180 TPKSILELMD VKDLTLAHVK SHLQMYRTIK STDKPAASSG QSDGSGEEDL VPGDGHLPIM 240 DHKVSDAPKQ VHPLDSDIGW INSSSRQEWM QINSNGINSA VLRSTSLSSQ IEDGYCRSSS 300 TDDSCQEHQI PSLEFTLGRS DWHSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	156	210	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	156	210	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	156	210	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	156	210	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	156	210	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387077.1	0.0	PREDICTED: probable transcription factor RL9 isoform X1
Swissprot	Q93WJ9	4e-54	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	M0U9C5	0.0	M0U9C5_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP15160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2558	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	7e-51	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]