PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP13500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 344aa    MW: 38481.3 Da    PI: 8.5167
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP13500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-171170155
                            AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                                   s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  GSMUA_AchrUn_randomP13500_001 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 70
                                   57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-121170IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-171179IPR016177DNA-binding domain
PROSITE profilePS5103220.021278IPR001471AP2/ERF domain
SMARTSM003801.5E-241284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-151279IPR001471AP2/ERF domain
PRINTSPR003673.1E-51324IPR001471AP2/ERF domain
PRINTSPR003673.1E-56080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  60
YDLAALKYWG AGTLINFPVT DYARDLEEMQ MVSKEDYLVK SSAFSRGFPK YRGLSRQPQN  120
NRWETPFRQM PGDEYFNNCS TSSDAATDGR FAGIAGLERK VDLTSYIKWW MPKKARQPES  180
ASPVEDVGRE LRMLECSVQP TEPYKLPSLG LPGRGDAPQR LSACSILSRS DSFKSFLHKS  240
LNSGDIKDDG SHKTMDHEKS VPLLYSGCGL GISGVSVALN ELPVPRTAYQ MALLSAPLRS  300
SYPIDPASEP LLWTSPPPSQ QPLGEPQLRK NEMTSSAYAY QCQD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386856.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK28e-98AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLM0U8V90.0M0U8V9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP13500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.18e-94AP2 family protein