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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP10540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 769aa MW: 83419.6 Da PI: 6.0074 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.8e-21 | 115 | 170 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+eeLe++F+ +++p++++r eL+k+l+L+ rqVk+WFqNrR+++k GSMUA_AchrUn_randomP10540_001 115 KKRYHRHTPHQIEELEAFFKDCPHPDEKQRLELSKRLSLEARQVKFWFQNRRTQMK 170 688999***********************************************999 PP | |||||||
2 | START | 172.6 | 2.5e-54 | 265 | 511 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeq 71 ela++a++elvk+a+ e+p+Wv e +n++e+l++f++ + +ea ra+g+v+ ++ lve+l+d + GSMUA_AchrUn_randomP10540_001 265 ELALTAMDELVKMAQMEDPLWVPTLdgrkETLNYEEYLRSFPRCIGakpveLVSEATRATGAVIINSLALVETLMDAT-R 343 5899*********************9***************9998899******************************.* PP T-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..- CS START 72 Wdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.s 139 W +++ +a+t++vissg g+lq+m aelq+lsplvp Rd+ f+R+++ql++g w++vdvS+d ++ + GSMUA_AchrUn_randomP10540_001 344 WVDMFPsviaRATTIDVISSGmggsrnGVLQHMHAELQVLSPLVPvRDVRFLRFCKQLTEGAWAVVDVSIDGIRDDLSaP 423 **********************************************************************9988877677 PP TTSEE-EESSEEEEEEEECTCE......................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS START 140 ssvvRaellpSgiliepksngh......................skvtwvehvdlkgrlphwllrslvksglaegaktwv 197 ++ + +++lpSg+l+++++ng+ s vtwveh++++++ +h l+r+lv+sg+a ga +wv GSMUA_AchrUn_randomP10540_001 424 PPNMSCRRLPSGCLVQDMPNGYskvlksflistlslpalpisslSAVTWVEHAEYDEAAVHPLFRPLVRSGMALGAHRWV 503 889999************************************************************************** PP HHTXXXXX CS START 198 atlqrqce 205 lqr c+ GSMUA_AchrUn_randomP10540_001 504 VSLQRRCQ 511 *****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-20 | 102 | 172 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 109 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 112 | 172 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-20 | 113 | 176 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-18 | 115 | 170 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.16E-19 | 115 | 173 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 147 | 170 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.858 | 256 | 515 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.38E-26 | 262 | 513 | No hit | No description |
CDD | cd08875 | 3.62E-113 | 262 | 511 | No hit | No description |
SMART | SM00234 | 2.0E-36 | 265 | 512 | IPR002913 | START domain |
Pfam | PF01852 | 6.4E-46 | 265 | 511 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-17 | 531 | 733 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MSFGGLFDSG SGSGGGGART GLADAVHRSS TAMSASNISQ PLLASPSLPM FNSPGLSLTL 60 QSDMEGTGAA GKGGAWDLDS GRQNKEDENE SRSGGSDNLG GLSGDNLEQE NPRKKKRYHR 120 HTPHQIEELE AFFKDCPHPD EKQRLELSKR LSLEARQVKF WFQNRRTQMK TQMERHENMI 180 LRQENDKLRA ENLSIREATR NPLCSNCGGL AMLGEGSLEE QHLRIENARL KDELDHSTLD 240 LAVGNNVFGG LDGVDRSQER FVFLELALTA MDELVKMAQM EDPLWVPTLD GRKETLNYEE 300 YLRSFPRCIG AKPVELVSEA TRATGAVIIN SLALVETLMD ATRWVDMFPS VIARATTIDV 360 ISSGMGGSRN GVLQHMHAEL QVLSPLVPVR DVRFLRFCKQ LTEGAWAVVD VSIDGIRDDL 420 SAPPPNMSCR RLPSGCLVQD MPNGYSKVLK SFLISTLSLP ALPISSLSAV TWVEHAEYDE 480 AAVHPLFRPL VRSGMALGAH RWVVSLQRRC QSLAMLMSSS LSHDDTTTIT PSGRRSMLKL 540 AQRMTDNFCA GVCASSAHEW NNLSGGINIG EDVRVKTSQN VAEPGEPPGV VLSAATSVWL 600 PIAPQRLFDF LRNQQLRSQW DILSNGGPME EMAHIANGKE TGNTVSLLRA SAVSADHNSM 660 LILQETCTDA SGSVVVYAPV DVPAMHLVMS GGDSTYVTLL PSGFAILPDG RGSGAGVTHK 720 AGGSLLTVGF QILVNNQPTA KLTVESVETV SNLISCTVEK IKAAIHCEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018677084.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC5-like | ||||
Refseq | XP_018677085.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC5-like | ||||
Refseq | XP_018677087.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC5-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | M0U813 | 0.0 | M0U813_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP10540_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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