PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP10390_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 396aa MW: 44424.9 Da PI: 6.7957

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP10390_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	159	212	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ++R+ GSMUA_AchrUn_randomP10390_001 159 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMFRT 212 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-15	156	213	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-27	157	212	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-23	159	212	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-6	160	210	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MELFPAQPDF SLQISPSNTT PASGWRSHDE NMELGFWRRS LDSTNNSNNK SSTIPCTAKA 60 DDITFELSLG SPSATVSSNT RDSLLLRYHS ELSLLKPIRG IPIYQNPPSS FPLVPPHQPQ 120 HMYDSSSSSS FTPFATTPGM SRSRFSPSRF PAKRVMRSPR MRWTTTLHAR FVHAVELLGG 180 HERATPKSVL ELMDVKDLTL AHVKSHLQMF RTVKNTDRPT ISSGQSEGCE NGSNGEMYDD 240 NLLDNTNIPH RLGSSMQHQW PATHPDADHI RPWSNSLSKE GCSSESPTES MQSLKKDLQT 300 KSFEMYLDLN SSCLSETLNS SKPNLEFTLV LIIHKRRRYI SDMARLIDEV KDVGCVPDTD 360 SLFEVEEDVQ EHLLNTQSEK LAIAFRLKNA TPGTTM

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MELFPAQPDF SLQISPSNTT PASGWRSHDE NMELGFWRRS LDSTNNSNNK SSTIPCTAKA  60
DDITFELSLG SPSATVSSNT RDSLLLRYHS ELSLLKPIRG IPIYQNPPSS FPLVPPHQPQ  120
HMYDSSSSSS FTPFATTPGM SRSRFSPSRF PAKRVMRSPR MRWTTTLHAR FVHAVELLGG  180
HERATPKSVL ELMDVKDLTL AHVKSHLQMF RTVKNTDRPT ISSGQSEGCE NGSNGEMYDD  240
NLLDNTNIPH RLGSSMQHQW PATHPDADHI RPWSNSLSKE GCSSESPTES MQSLKKDLQT  300
KSFEMYLDLN SSCLSETLNS SKPNLEFTLV LIIHKRRRYI SDMARLIDEV KDVGCVPDTD  360
SLFEVEEDVQ EHLLNTQSEK LAIAFRLKNA TPGTTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	160	214	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677070.1	0.0	PREDICTED: probable transcription factor KAN2
TrEMBL	M0U7Z8	0.0	M0U7Z8_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP10390_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-44	G2-like family protein