PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP09610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 360aa    MW: 40219.2 Da    PI: 10.0823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP09610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032151173223
                                    EETTTTEEESSHHHHHHHHHH.T CS
                        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                    +C++Cg++F   + L++H  + H
  GSMUA_AchrUn_randomP09610_001 151 TCHKCGEHFGKLEALESHHLSkH 173
                                    7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280152173IPR007087Zinc finger, C2H2
SuperFamilySSF563993.26E-20175359No hitNo description
Gene3DG3DSA:3.90.228.101.6E-10178359IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGVEKTPTVW FALKKSLHCK SEPSDVYDPK TRGRMGTILT RKAGRSGCSR SIANLKDVIH  60
GSKRHLERPP SCSPRSIGSN EFLNPITHEV ILSNSRRALC PPQHSFTQGS QHHTSKEISY  120
PLRVGFHHAA STPRFSHEAD SQTKRPSAAV TCHKCGEHFG KLEALESHHL SKHAVTELVE  180
GDSSRKIVEI ICRASWLKPE SSCIRIDRVL KVHNMQKTLA RFEEYRELVK NKANRLAKKH  240
PRCLADGNEL LRVCRIIRHG FSTKREIAKG GIGVFTSSTS GRAFQTIEPC EDDNSTKKAL  300
LVCRVIAGRV HKPLDNYQEL AGQSGFDSVA GKLGLYANIE ELYLFNPRAL LPCFVVICRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386466.10.0PREDICTED: uncharacterized protein LOC103973578
TrEMBLM0U7S10.0M0U7S1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-138C2H2 family protein