PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP09270_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 489aa MW: 53378 Da PI: 8.9999

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP09270_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H GSMUA_AchrUn_randomP09270_001 50 FVCEVCNKGFQREQNLQLHRRGH 72 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.13E-7	49	72	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.5E-6	49	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	3.1E-5	50	72	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	50	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-4	114	147	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.13E-7	121	146	No hit	No description
SMART	SM00355	230	126	146	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MISTATSKRQ ARPQLLLLPR RRGTSLETQA NPDAEVIALS PKTLLATNRF VCEVCNKGFQ 60 REQNLQLHRR GHNLPWKLKQ KNPNEVRRRV YLCPELTCVH HDPSRALGDL TGIKKHYCRK 120 HGEKKWKCDR CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAQE 180 GARIPAGMNT IGGHVYANRG TNLDLPQLSS QLSSLQDQAH HPSTDLLRLR GSSGSAKFEQ 240 LNATTSPFYL GAASNQGFDE NPELLPSKPF HAMMQLQDLQ TNNSASSSAA AAANLFNLGF 300 FSSSGSTSGG TEPMSLFTGE LMSDHTDTNM PSLYTPSLHT EPVVPQMSAT ALLQKAAQMG 360 ATPIGASGSS LLGEFSGSYP GGARHVGFRR NPKEGGGESS RTHVDDENHF QYIMNSLANG 420 NSGVFSGMDE QVSSGILTRD FLGVGNMMRS MGGGIPPREQ QLGIDMDSLD HSEMKPGSST 480 RSFGGGRLQ

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MISTATSKRQ ARPQLLLLPR RRGTSLETQA NPDAEVIALS PKTLLATNRF VCEVCNKGFQ  60
REQNLQLHRR GHNLPWKLKQ KNPNEVRRRV YLCPELTCVH HDPSRALGDL TGIKKHYCRK  120
HGEKKWKCDR CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAQE  180
GARIPAGMNT IGGHVYANRG TNLDLPQLSS QLSSLQDQAH HPSTDLLRLR GSSGSAKFEQ  240
LNATTSPFYL GAASNQGFDE NPELLPSKPF HAMMQLQDLQ TNNSASSSAA AAANLFNLGF  300
FSSSGSTSGG TEPMSLFTGE LMSDHTDTNM PSLYTPSLHT EPVVPQMSAT ALLQKAAQMG  360
ATPIGASGSS LLGEFSGSYP GGARHVGFRR NPKEGGGESS RTHVDDENHF QYIMNSLANG  420
NSGVFSGMDE QVSSGILTRD FLGVGNMMRS MGGGIPPREQ QLGIDMDSLD HSEMKPGSST  480
RSFGGGRLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	122	189	3	70	Zinc finger protein JACKDAW
5b3h_F	5e-35	122	189	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120603	1e-160	AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386431.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
Swissprot	Q9ZUL3	1e-113	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	M0U7N7	0.0	M0U7N7_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP09270_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-107	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]