PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP08380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 372aa    MW: 41006 Da    PI: 7.63
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP08380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.7e-4294170278
                                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                    C v+gC+adls+++eyhrrhkvCevhsk+p v+v+g+eqrfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+
  GSMUA_AchrUn_randomP08380_001  94 CLVDGCTADLSNCREYHRRHKVCEVHSKTPLVMVRGQEQRFCQQCSRFHLLEEFDEAKRSCRKRLDGHNRRRRKPQP 170
                                    **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-3390155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.40291168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-4092173IPR004333Transcription factor, SBP-box
PfamPF031102.9E-3194167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDWDLRTPPW NLAELDRDAE LSIGSVVVGP SGGGLGCRST GVDFSVDLKL GGLGDFGSSH  60
KCTEQPTVAT STVSPSGPPK RPRAPVNGCR SVSCLVDGCT ADLSNCREYH RRHKVCEVHS  120
KTPLVMVRGQ EQRFCQQCSR FHLLEEFDEA KRSCRKRLDG HNRRRRKPQP DSVNSGSLFL  180
DHQGFSAAYP QIFPVAAPES NWARMVKTED GTLYAPSQFI NHHQHFPNSS YSISKERRQM  240
PFFQDSKTVL DIKSTPQVSV DQLNLSTNTP SGSSGCNSKM FNEGLTRVFN SDCALSLLSS  300
PTQTSDINLS HMMPLADRIP TGQPIVSCLQ YGRTVLVSDR ASDAEINCQN IFHVLGEGSS  360
DATCQTLPFS WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386310.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLM0U7E90.0M0U7E9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP08380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-46SBP family protein