PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP07580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 229aa    MW: 24696.8 Da    PI: 7.2586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP07580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013141163123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    ++C++Cg  Fs+   L  H+r+H
  GSMUA_AchrUn_randomP07580_001 141 HECSICGSEFSSGQALGGHMRRH 163
                                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-11108133IPR007087Zinc finger, C2H2
SuperFamilySSF576677.54E-7108163No hitNo description
SMARTSM003551.5109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
PfamPF139126.6E-12140164IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764141163IPR007087Zinc finger, C2H2
SMARTSM003550.02141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDSVEEGKEY HHHNSSSSSS CNNNDRGARA VVKGKRTKRR RVHLPPASAL AGPTTSSASS  60
AEFSSSITEE DEDMANCLVL LSRGRNCTSL GSAEAAVATT DAKAGACVYE CKTCYKCFPS  120
FQALGGHRAS HKKPRMMSRV HECSICGSEF SSGQALGGHM RRHRPLLTTK ESPELKKESC  180
VLSLDLNLPA PSDGDHEELL ILPPAMTAFP FEGEQPLVFS ATPLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386213.11e-135PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-38ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM0U7691e-167M0U769_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP07580_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-36C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]