PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP07080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 299aa    MW: 32599.1 Da    PI: 5.192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP07080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-112272661054
                                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r+RR+riN+++ +L++l+P+      +K++ +++Le+AveY+k L
  GSMUA_AchrUn_randomP07080_001 227 RKRRERINERLRTLQSLVPNG-----TKVDLSTMLEEAVEYVKFL 266
                                    9******************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14218283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12222276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.80E-12226271No hitNo description
PfamPF000105.5E-8227266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFGGLVSEG SWSCFDSEVM THLCDSHHFA EEQDQGLSMV TPAMLCSDHS SHSYSSYWPQ  60
YNSSSFLPHA DYGGYSICTG EEQITAPSFP GDQFNLEVGG LFAKPPFPLL PCDHNAEATK  120
KRVTTSELEM TGSGDGHTVS PNKKARAAAS VPKKRKNPQP KKAQRTVATA NEEEGNGELN  180
SQSSSCYSSE EDCNGSQELL GSGITSSSSK ATAGRGSSTD PQSLYARKRR ERINERLRTL  240
QSLVPNGTKV DLSTMLEEAV EYVKFLHLQI KLLSSDDLWM YAPIAYNGMS VGFDLNISP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386147.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLM0U7190.0M0U719_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP07080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-38bHLH family protein