PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP06770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 584aa    MW: 63937.4 Da    PI: 5.5587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP06770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07249269526
                                    --SGGGGTS--TTTTT-SS-SS CS
                        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                    +C++f++ G C +Gd C +aHg
  GSMUA_AchrUn_randomP06770_001 249 PCPDFRK-GACTRGDMCEYAHG 269
                                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.41E-1514137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.3E-1640137IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-852127IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0495786IPR002110Ankyrin repeat
PROSITE profilePS5029719.75757165IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.1375789IPR002110Ankyrin repeat
CDDcd002041.44E-657138No hitNo description
PROSITE profilePS5008811.83593128IPR002110Ankyrin repeat
SMARTSM002480.01993125IPR002110Ankyrin repeat
SMARTSM003567.6E-6244270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4247271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291249271IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5249269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MNHLAVEPDD SFSNLLELAA NNDVDAFRRS LDRDPSAIDE FGLWYGREKG SNRMVLERRT  60
PLMVAATYGS LDVLGLLLSL TSSVDINRAA ALDGTTALHC AASGGSPSAA DAVKLVLSAG  120
ANPNSVDANG HRPADVVVVP PKLPDVRTAL EQLLGRSSNG TVEDHQHCAL RAQEIQPPAF  180
PEKKEYPVDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  240
RKYHYSCVPC PDFRKGACTR GDMCEYAHGV FECWLHPAQY RTRLCKDGTN CSRRSANGVS  300
HSSLAWAQPN VPVLHLPGSN LQASRLRSSL SARDMPSDDF SVMHECDAQQ LIDDLCYTRL  360
SSSLGSRMAP SKTLAPSNLD DLFSAEFASS PKYKSDEGPF FSPSHKAAIL GQFQQQQSLL  420
SPINTVMSPR SMEPISPLNS HSSLYAHWEK QLQTPRSMSS RDLGSGTSLV VSSPVNASWS  480
NWVSSPSGTF DWGVNGDELG LHKQWPFFEL QDNGEEPDLS WVHSLVRESP PEKIGTVSVL  540
LPGPSRLQPA NGVEGSNSDS QPDSLDEAAV VGAFEQMQLD QMVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386116.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM0U6Y80.0M0U6Y8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP06770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-173CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]