PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP04420_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 229aa    MW: 25701.7 Da    PI: 4.3822
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP04420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.1e-1551126279
                       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                    Wt  e l+L++ +  m+e+  r+ +  ++W+ +s+++ +  + rs+ qCk +we+l   y+ki+e+e+++ +   s +
  GSMUA_AchrUn_randomP04420_001  51 WTTYELLVLVNETAAMDEDWLRALSSYQKWKMISDNCVALDVIRSSYQCKRRWESLLAGYRKIREWESRHGE--GSYW 126
                                    ********************************************************************9833..3345 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.82943107IPR017877Myb-like domain
PfamPF138379.3E-950124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEQAGIIQAL PITPMKEKES QRRKMSTDAS ISPRGPASSS RCTRSQAAAD WTTYELLVLV  60
NETAAMDEDW LRALSSYQKW KMISDNCVAL DVIRSSYQCK RRWESLLAGY RKIREWESRH  120
GEGSYWSLDS EEKHNLGLPT SFDPEIFGSM DTIIKPHEDQ AWWGDVDSEN LMDTAGGSED  180
LIVTMEAGML DANGAQDIIV GIYSGGGEQT CNQLNLDFDD CTPCTRRIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385915.11e-144PREDICTED: uncharacterized protein LOC103973149
TrEMBLM0U6A41e-170M0U6A4_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP04420_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-35sequence-specific DNA binding transcription factors