PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP04060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 759aa MW: 83831.6 Da PI: 4.5627

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP04060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.7	1.7e-51	49	182	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknrat 78 lp GfrF+Ptdeelv++yLk+k++g+ + evi+e+d++k+ePwdLp k +k+++ ew+fF+++d+ky++g+r+nrat GSMUA_AchrUn_randomP04060_001 49 LPLGFRFQPTDEELVNYYLKPKITGRIRSQMEVIPEIDVCKCEPWDLPdKsVIKSDDPEWFFFAPKDRKYPNGHRSNRAT 128 699*********************988889***********96446777888****************** PP NAM 79 ksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++gyWkatgkd+ + sk k++ +g+kktLvf++grapkg +t+W+mheyr GSMUA_AchrUn_randomP04060_001 129 EAGYWKATGKDRIIRSKssagKSTIIGMKKTLVFHRGRAPKGARTHWIMHEYRT 182 ***********9988777777*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-57	41	203	IPR003441	NAC domain
PROSITE profile	PS51005	56.776	49	203	IPR003441	NAC domain
Pfam	PF02365	3.5E-27	50	181	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MLPFTLCIGG VSAIFSIHVT PPHHTAFFFP APLIILSIDA MTLIALDSLP LGFRFQPTDE 60 ELVNYYLKPK ITGRIRSQME VIPEIDVCKC EPWDLPDKSV IKSDDPEWFF FAPKDRKYPN 120 GHRSNRATEA GYWKATGKDR IIRSKSSAGK STIIGMKKTL VFHRGRAPKG ARTHWIMHEY 180 RTTEPEFESG DQGGYVIYRL FRKLEQRIST SKADEMETNG FSPSPIKSSP GDTQHEADVM 240 DDTETLLNDS PKSDLKEEPK SSSDSVHKQP AGIKRRMVDK VDCSTDVSVK PGRSYCKLDS 300 PDEEIEVGEK ADPLQDALAK FFDPGNEQID RDVFPNISSI ELPDTNYTCM GNENQEFQIG 360 SLPVDNGDED LLNEFLISAL NPDNLSSGAS IFSKDSVAGN LLKPSLWDSA SCKDSGTSSD 420 IETEPGLPQG GAGLEASEWF CGSSLLPTDS SLLPTQLSTL YENATLLPYD ITGTDMYSID 480 SGADSLQDLF NGMWELNNQK TVSDSKDDSE GTGIKIVSHQ MQPVQPNSDN FFVQGTAARR 540 IRLQSSILKV PFAEPLSRSN DEDEASTTNA KGDILGTMEE ATSKKNTMRN RDGPVETGLK 600 IRDQQSPNEL FAQQGETSIN DTWCYELPSG FDHEPSISSD YGIRSGRTEV EEHVGDNISE 660 GEESAVPALP DKLDQSSILD TDEKPSGSSE HQMPDSVLRL RTKSTSDSEN MHKHSPPSCP 720 KASRGHSVIV YMMYLVLSVV LLLLCFGIRR CMSPLSVQL

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MLPFTLCIGG VSAIFSIHVT PPHHTAFFFP APLIILSIDA MTLIALDSLP LGFRFQPTDE  60
ELVNYYLKPK ITGRIRSQME VIPEIDVCKC EPWDLPDKSV IKSDDPEWFF FAPKDRKYPN  120
GHRSNRATEA GYWKATGKDR IIRSKSSAGK STIIGMKKTL VFHRGRAPKG ARTHWIMHEY  180
RTTEPEFESG DQGGYVIYRL FRKLEQRIST SKADEMETNG FSPSPIKSSP GDTQHEADVM  240
DDTETLLNDS PKSDLKEEPK SSSDSVHKQP AGIKRRMVDK VDCSTDVSVK PGRSYCKLDS  300
PDEEIEVGEK ADPLQDALAK FFDPGNEQID RDVFPNISSI ELPDTNYTCM GNENQEFQIG  360
SLPVDNGDED LLNEFLISAL NPDNLSSGAS IFSKDSVAGN LLKPSLWDSA SCKDSGTSSD  420
IETEPGLPQG GAGLEASEWF CGSSLLPTDS SLLPTQLSTL YENATLLPYD ITGTDMYSID  480
SGADSLQDLF NGMWELNNQK TVSDSKDDSE GTGIKIVSHQ MQPVQPNSDN FFVQGTAARR  540
IRLQSSILKV PFAEPLSRSN DEDEASTTNA KGDILGTMEE ATSKKNTMRN RDGPVETGLK  600
IRDQQSPNEL FAQQGETSIN DTWCYELPSG FDHEPSISSD YGIRSGRTEV EEHVGDNISE  660
GEESAVPALP DKLDQSSILD TDEKPSGSSE HQMPDSVLRL RTKSTSDSEN MHKHSPPSCP  720
KASRGHSVIV YMMYLVLSVV LLLLCFGIRR CMSPLSVQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-42	48	203	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-42	48	203	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-42	48	203	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-42	48	203	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-42	48	203	19	168	NAC domain-containing protein 19
3swm_B	3e-42	48	203	19	168	NAC domain-containing protein 19
3swm_C	3e-42	48	203	19	168	NAC domain-containing protein 19
3swm_D	3e-42	48	203	19	168	NAC domain-containing protein 19
3swp_A	3e-42	48	203	19	168	NAC domain-containing protein 19
3swp_B	3e-42	48	203	19	168	NAC domain-containing protein 19
3swp_C	3e-42	48	203	19	168	NAC domain-containing protein 19
3swp_D	3e-42	48	203	19	168	NAC domain-containing protein 19
4dul_A	3e-42	48	203	16	165	NAC domain-containing protein 19
4dul_B	3e-42	48	203	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385838.1	0.0	PREDICTED: protein NTM1-like 9 isoform X1
TrEMBL	M0U668	0.0	M0U668_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP04060_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-74	NAC transcription factor-like 9