PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 250aa MW: 26527.5 Da PI: 7.1856

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP03390_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.3	1.1e-30	68	122	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhA+++GghavDGC Ef+++ gee t +al+CaAC CHRnFHRre+e GSMUA_AchrUn_randomP03390_001 68 GVRYRECLKNHAVAIGGHAVDGCSEFLAA-GEEDTLDALRCAACSCHRNFHRREEE 122 589***********************9.8888*****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.8E-28	69	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.4E-27	70	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.856	71	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-19	71	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.2E-19	178	248	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-31	179	249	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.7E-25	187	244	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDFEDHDEAD EEMGLLAISG YDNPMPNSAR GGAGGGGDKM GGSAGGAEEA AVSGSGKRKV 60 GGDGGGWGVR YRECLKNHAV AIGGHAVDGC SEFLAAGEED TLDALRCAAC SCHRNFHRRE 120 EEGGGGAAVL ETVGCYHRFS PFYRTPAGYL HHRHHMVVAA DSNPMMGAGG LVGVGGATGT 180 SGSGGHRKRS RTKFTQEQKE KMLAFAERVG WRIQKHDEAA VQQFCGETCV DRHVLKVWMH 240 NNKQTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-26	188	245	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM476712	9e-46	AM476712.2 Vitis vinifera contig VV78X131483.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385760.1	1e-146	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	3e-77	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	M0U601	0.0	M0U601_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP03390_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-61	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]