PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP02870_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 313aa MW: 35102 Da PI: 9.5745

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP02870_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.6e-32	96	149	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ GSMUA_AchrUn_randomP02870_001 96 PRMRWTTTLHDRFVRAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 149 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-29	94	150	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.5E-16	94	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-24	96	149	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	97	148	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MELFAAQPDL SLQISPPSAT PSGRRKHDEN MELGSMEPIP GIPVYRHAPS LALVAPQRQH 60 HHLCGCSSST HSFTTFAASQ GLSRSRFPAK RITRAPRMRW TTTLHDRFVR AVELLGGHER 120 ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KNTDKPAVPS GQCDGFENGS SGDHSEETLT 180 GIQSLHRSES SGAAHCRVDH AGVWSNTSRI CSQKALKCSP YRTHQARISR ILRSPLADHI 240 DMSFPLQDHF IRLQKETVPA PHRGHARNCQ EQKVKERAQA TENKVRLCIH LSVSVPKIVF 300 LDDMHMYMDL VFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385747.1	1e-144	PREDICTED: probable transcription factor KAN2
TrEMBL	M0U5U9	0.0	M0U5U9_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP02870_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-48	G2-like family protein