PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 290aa    MW: 32633.4 Da    PI: 5.6464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-53101381129
                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                                    lppGfrF P+deelv++yL+kkv+++++++  ++ evd+++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratks
  GSMUA_AchrUn_randomP02760_001  10 LPPGFRFYPSDEELVCHYLQKKVANERVSC-GTMVEVDLHTREPWELPEVAKLSANEWYFFSFRDRKYATGSRTNRATKS 88 
                                    79**************************99.88***************88888999************************ PP

                            NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    gyWkatgkd++v++  ++++vg++ktLvfy+grap+g kt+Wvmhe+rle
  GSMUA_AchrUn_randomP02760_001  89 GYWKATGKDRTVYDPaTRAVVGMRKTLVFYSGRAPNGMKTNWVMHEFRLE 138
                                    **************977788***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-628156IPR003441NAC domain
PROSITE profilePS5100559.22510156IPR003441NAC domain
PfamPF023651.0E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGLRDIESTL PPGFRFYPSD EELVCHYLQK KVANERVSCG TMVEVDLHTR EPWELPEVAK  60
LSANEWYFFS FRDRKYATGS RTNRATKSGY WKATGKDRTV YDPATRAVVG MRKTLVFYSG  120
RAPNGMKTNW VMHEFRLESP HTPPKEDWVL CRVFNKKKGD PTSSSLENEQ DNNHSLGCFS  180
SFMESSPPQH EQQFPDGCYE QITSSFPVVP PQEDNSSNTF LSLAALRYNF LGFPQDMDST  240
RMTGVGSSDL GGGDYGLVLD MGLEDHDLVG GGTANLGGIR FQGGRDQLFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5211571169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385696.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ26e-62NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0U5T80.0M0U5T8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.18e-84NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]