PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 364aa    MW: 39761.1 Da    PI: 10.4897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-054870123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                   + C+ C+k F r  nL+ H r H
  GSMUA_AchrUn_randomP02370_001 48 FICEVCNKGFQREQNLQLHRRGH 70
                                   89*******************88 PP
2zf-C2H216.52.3e-05124146123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    +kC +C+k++  +s+Lk H +t+
  GSMUA_AchrUn_randomP02370_001 124 WKCDKCSKRYAVQSDLKAHSKTC 146
                                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-84770No hitNo description
Gene3DG3DSA:3.30.160.603.7E-64770IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.6E-54870IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00524870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.994870IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5112145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.27E-8119144No hitNo description
SMARTSM0035562124144IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642124152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MASASSSPLR RHRPLPRRRE GTNQEIQANP DAEVIALSPK TLLATNRFIC EVCNKGFQRE  60
QNLQLHRRGH NLPWKLRLKS SKEVRRRVYL CPEPTCVHHD PSRALGDLTG IKKHFCRKHG  120
EKKWKCDKCS KRYAVQSDLK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCNALAQERS  180
RLPTAGLNNL GSHLYGNNTM ALSLFFSNNK MNSLYNTSMQ NESILPRMSA TALLHKAAQM  240
GLTTYGGSSL SRGFGSSTSG SLKPPSLGGG MGGGGGDGED GLQAQMENEA HLQNLMNSLA  300
NGSSSLFVCT GGTKFSLSSS GSLGVSDRLT RDFLGVGGMV RSISGGISRR EQNHGIGMNA  360
LDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33120189372Zinc finger protein JACKDAW
5b3h_F1e-33120189372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206031e-143AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385656.11e-129PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
TrEMBLM0U5P90.0M0U5P9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-106indeterminate(ID)-domain 5