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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP02340_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 467aa MW: 50747.1 Da PI: 8.1196 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a +++G W++I +++g ++t+ q++s+ qk+ GSMUA_AchrUn_randomP02340_001 39 RERWTEEEHRRFLEALQLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 83 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-16 | 33 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.732 | 34 | 88 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.2E-18 | 37 | 86 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 39 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 39 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.02E-10 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MHVDVKISTT SIPQTKEIET SGEEQAPRIR KPYTITKQRE RWTEEEHRRF LEALQLYGRA 60 WRRIEEHIGT KTAVQIRSHA QKFFSKVYDS FLSLAISRKC GDSTGTLKAI EIPPPRPKRK 120 PVHPYPRKLC NLLNKGTPAL KQLQRPPLQI SAICEHENRS PTSVLSAVGS ETLESTLSNG 180 QMGCSSPVTS AAGSNDQDDG GQSLTVTDEA DIKLPHSGPA FSGLTVQDQP RMEIDQCRHH 240 AHALDESRLP TLKLFGKMVV VTDPNMSSAP PTAGDLAQPN LISSVGIKGD QEKKAECLPS 300 TRGVSPGDLT ASAGNTYSGL VPPLLYFFPL FGHNSTEPAF RPPSWWATRG NLPIPLVHSL 360 PECPQQFNQE MQREGSWTGS NTACISGTSP SNQNADGVGS RKEANSAQNG TMPLLRQQLS 420 SVQASTSGTV GSARGFAPYK RCTVESEVQH AVADPDDGGS QAIRLCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385654.1 | 0.0 | PREDICTED: protein REVEILLE 1 isoform X1 | ||||
TrEMBL | M0U5P6 | 0.0 | M0U5P6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP02340_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 6e-39 | MYB_related family protein |