PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 288aa MW: 32160.1 Da PI: 9.5417

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP02160_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W+++++ g+ R+ k+c++rw +yl GSMUA_AchrUn_randomP02160_001 14 KGPWTPEEDISLVSYIQEHGPGNWRAVPANTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.4	2.1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E +++++ ++lG++ W++Ia++++ Rt++++k++w+++l GSMUA_AchrUn_randomP02160_001 67 RGNFTDQENRIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.14	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.6E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.46E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.13	62	116	IPR017930	Myb domain
SMART	SM00717	1.5E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-14	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	5.44E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSTPTCSEEV GVKKGPWTPE EDISLVSYIQ EHGPGNWRAV PANTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQENRIIIH LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKKLRKTD 120 IHKARRALCE ALLIEKPADC ASDDSSRTAY ASSAENISRL LEGRTGNPAG ATDAADGAST 180 TTQADSAASS QGTASTSNSV VSRQPSSYQT PFSLLESWLF DETVAQGSEN HGNGRCWCLR 240 TYHYLQKLPS IYMSNGIEPK KKHQLMSHII NKSDRFTKKH FLTQQINI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-28	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-28	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-28	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385639.1	1e-162	PREDICTED: myb-related protein 306-like
Swissprot	P81392	7e-83	MYB06_ANTMA; Myb-related protein 306
TrEMBL	M0U5M8	0.0	M0U5M8_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP02160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	3e-80	myb domain protein 60

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]