PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP00940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CAMTA
Protein Properties Length: 790aa    MW: 88683.6 Da    PI: 6.7392
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP00940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-152.78.6e-17348170117
                           CG-1  70 hekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                                    h + ++g+ e+++cyYah+e n+ fqrr+yw+L+ ++++ivlvhy++v
  GSMUA_AchrUn_randomP00940_001  34 HTHCQIGNYEAINCYYAHGEPNSCFQRRSYWMLDPAFDHIVLVHYRDV 81 
                                    88999****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143724.888187IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-41782IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-143381IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-4259345IPR013783Immunoglobulin-like fold
PfamPF018336.2E-6260343IPR002909IPT domain
SuperFamilySSF812963.08E-13260344IPR014756Immunoglobulin E-set
SuperFamilySSF484039.02E-16455552IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-17455551IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.945457549IPR020683Ankyrin repeat-containing domain
CDDcd002042.50E-10462549No hitNo description
PfamPF127964.5E-8478551IPR020683Ankyrin repeat-containing domain
SMARTSM002489.7E-5490519IPR002110Ankyrin repeat
PROSITE profilePS5008811.915490522IPR002110Ankyrin repeat
SMARTSM002481200529558IPR002110Ankyrin repeat
SMARTSM0001516590612IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364591620IPR000048IQ motif, EF-hand binding site
SMARTSM0001533643665IPR000048IQ motif, EF-hand binding site
SMARTSM000152.5E-4666688IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.597667691IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-4668688IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MIFVWSVFDT LANLVYFLVM LLMNFMLIHC LNMHTHCQIG NYEAINCYYA HGEPNSCFQR  60
RSYWMLDPAF DHIVLVHYRD VIKGRHIPKS IVSSSIDSCP TLRYSTSVSN DQAQGIHSCT  120
IEFNDPCQNS CSPGSVEEII SQVTGGNIKI QALRKLEEQL SLDKDKDSFA SSEEELPPFC  180
NLNVETHNTQ DETRSPKEEA LQNPLDKFQQ MSNGTGETAP SAEISEFSSL FTDMWFDQSQ  240
FGAPRRTESG LTLAERHLFT IREVVPEWAF SSEPTKVIIT GDFHCSPFEH TWTVLFGDIE  300
VPLEIVQDGV FRCLTPQQSA RKVKLCITSG NSQPCSEPHE FEFREKPEKA SCSSTSVGAV  360
ATKISAELLS LVKFMQILFS SASNPQEDLE LEVDPLRKLE GSKNQLEPII EALLSGSMAP  420
EKIMNAILQE LLKDKLHQWL SFKHQGATEK DHLLSKQEQC IIHMISALGY QWALLPILKS  480
GVCINYRDSN GWTALHWAAS SGREEMVAAL LAAGASAGVV TNPSAHDPAG KTPASLAAAS  540
GHKGLAGYLS EAALTSHLFS LTTERNERFE ESAYVEDQLS LKDSLAAVRN AVQAAARIQA  600
AFRAYSFRRK QQEAAICMSP AGVHELSVAS RSHKAFYGFS DKKYEQAALS IQRNYQRWKR  660
RKEFLQKRRC IVKIQAHVRG RLARENYKEL LWSVGVLEKA LLRWHRRGVG LRGFQAEPEY  720
IDEEEDDIVK VLRRQNLDTA INEAVFKVTS VVGSPRARQQ YRRMLESYQQ VKDSIILSSP  780
KGPDSASTKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385484.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
RefseqXP_009385485.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
RefseqXP_018676681.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
TrEMBLM0U5A60.0M0U5A6_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP00940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-140Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains