PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP00010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 275aa    MW: 31335.9 Da    PI: 8.8287
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP00010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181865148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT eEd+ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_AchrUn_randomP00010_001 18 KGAWTVEEDLLLMNYIASHGEGQWNSLARCAGLRRTGKSCRLRWLNYL 65
                                   79********************************************97 PP
2Myb_DNA-binding53.26.6e-1771114146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_AchrUn_randomP00010_001  71 RGNITPEEQLLILELHSRWGNR-WSKIAQCLP-GRTDNEIKNYWRT 114
                                    7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8471365IPR017930Myb domain
SuperFamilySSF466898.99E-3115112IPR009057Homeodomain-like
SMARTSM007173.7E-141767IPR001005SANT/Myb domain
PfamPF002492.4E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221972IPR009057Homeodomain-like
CDDcd001675.71E-112065No hitNo description
PROSITE profilePS5129423.3966120IPR017930Myb domain
SMARTSM007173.6E-1570118IPR001005SANT/Myb domain
PfamPF002492.3E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2373119IPR009057Homeodomain-like
CDDcd001671.18E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MHPSFYRAPC CPPASVRKGA WTVEEDLLLM NYIASHGEGQ WNSLARCAGL RRTGKSCRLR  60
WLNYLRPDVR RGNITPEEQL LILELHSRWG NRWSKIAQCL PGRTDNEIKN YWRTRVEKQA  120
KQLRCDVDSQ RFKDMVRYMW MPRLAERILA SSGGSSAPLA STGGTASSTQ ACDVVTASES  180
VPSPGACDGL GSLDWEESLW SMVEVWTPAI QRNYTNCNSK ESSVFLVLFK CTFASISSSF  240
FSFFFSLLIF LYSFNFLSVT FALFFLLDVT KKYIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24181207108B-MYB
1h8a_C7e-241811227120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385372.11e-135PREDICTED: transcription factor MYB108
TrEMBLM0U5130.0M0U513_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP00010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-74myb domain protein 78