PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P29330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 382aa    MW: 41738.6 Da    PI: 8.6995
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P29330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22.1e-4294170278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            C v+gC++dls+ +eyhrrhkvCevhsk+pvv+v g+eqrfCqqCsrfh+l+efDe krsCr+rL++hn+rrrk+q+
  GSMUA_Achr9P29330_001  94 CLVDGCKSDLSNSREYHRRHKVCEVHSKTPVVMVGGQEQRFCQQCSRFHQLEEFDEVKRSCRKRLDGHNKRRRKPQP 170
                            **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3487155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18891168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-3992172IPR004333Transcription factor, SBP-box
PfamPF031103.9E-3294167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEWNPNKLLS WGFSGLEQQK AELTMGSLVE RSRGLGSQTS EMDCSVDLKL GGSAGFRPPE  60
KWRSQATTAT TKAAASGPPR RARAPGNAGQ TAACLVDGCK SDLSNSREYH RRHKVCEVHS  120
KTPVVMVGGQ EQRFCQQCSR FHQLEEFDEV KRSCRKRLDG HNKRRRKPQP GSTSPGSLFP  180
NHHQGSSRYL MYPHLLPTPR EEHNWPAIYT THLPLHAVDS QQQLSVPFCG NQDGKQLPLL  240
QHGNTAFGRT TMEPPTRQPF LKTESSSSSN NKILSHGDCA LSLLSSTPSP GVAVGMGQML  300
PAGRIPVHHQ PLVSSLPYNH LDRYASSQAS SYVSQTGFSY SGFEDAVLVG DADTDLHCQS  360
TVHVGGDGSS VGASQPLPFS WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNKRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673758.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLM0U4J00.0M0U4J0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P29330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-46SBP family protein