PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P28050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 576aa    MW: 63233.8 Da    PI: 8.7079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P28050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-11228284255
                            HHHHHHHHHHHHHHHHHH.......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsa.......feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r +h++ E+rRR++iN++       f+ Lrel+P++    +++ +Ka+ L +++eY++ Lq
  GSMUA_Achr9P28050_001 228 RSKHSATEQRRRSKINDRqvnekclFQILRELIPHS----DQRRDKASFLMEVIEYVRFLQ 284
                            889**************777777779*********9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-13223293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18223303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.198226283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8228284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-12228288No hitNo description
SMARTSM003535.0E-5232289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKSSSSFLSI FVFFLFVVAN VFPGFFLKTR DFLQPPERGK EEDAVPVERP AEQPLPGEVG  60
TYAIGHAAGA VKPQRRGCSE APGFPAGLQT KPEPEYGGRT TTTASYRHAG GTSYTPWDDN  120
DTDSGGNIFI TFFIYRQRTS HFAAAGECHD SGPIPATVAI AAATTGRQDS TPEKKQLTET  180
ATSRSSRAYD GVEDEDFTKR EGSSASKDLT IKVDGKASCV DQRPNNPRSK HSATEQRRRS  240
KINDRQVNEK CLFQILRELI PHSDQRRDKA SFLMEVIEYV RFLQEKIQKH ESSPPGWNTD  300
NTKLIRWNNS QVPPNGLSVP PHVVKNDSAP PAHVFSKQLD ESRVPVVPPS PLSLHSPPAT  360
GHTAGVFYKT NSNLVATQNL LQPRLFPVGS ETSISQSQQR LADAGTMASH NRSPCVRTCS  420
LADCSVSKQM LNEQEELTID EGTISVSTVY SHGLLNTLTE ALQSSGIDLS QANISVQFKF  480
GKPPINKRPD ATATTSTIKE PEDPASCNQS IGYRRMGISG EESSRASKRH KAHRYYTGIP  540
CVDLGPIRLR FTSKHTMCRF RTNTASSYIS IPCVGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419223.10.0PREDICTED: transcription factor BIM2
TrEMBLM0U4620.0M0U462_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P28050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-49BES1-interacting Myc-like protein 2