PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P24720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 361aa    MW: 40081.1 Da    PI: 9.3071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P24720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048153175223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++Cgk+F  +  L+ H  + H
  GSMUA_Achr9P24720_001 153 PCHKCGKMFVKWQILEAHHLSkH 175
                            6************9999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
SuperFamilySSF563991.29E-13177360No hitNo description
Gene3DG3DSA:3.90.228.103.2E-4181313IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPTFWFALKR SLHCNSEPSE VHDPKARGHL ETILTRTAGR SGCSRSMANL KDVIHGSKRH  60
LPKPPSCSPR STGSSKLLNP ITHEVVLSNP SCELRRITGS GACHDSTYVG TVWSGTPWPG  120
VHHPLQHNPS CTPRRSPRFS HETDVQVSSA AVPCHKCGKM FVKWQILEAH HLSKHAVSEL  180
AEGDTSRKIV EMICRTSWLN TGSSCRQIER VLKIHNMQRN LAQFEEYRET IKLKASKLPK  240
KHPRCLADGN EHLSVCQIIR HGFSSKKESK GRIGVFTTST CGRALESIET CEDDPSVKKA  300
LLVCRVIAGR VHKPLDTYQE LVGRSAFDSM AGKIGIYGSI EELYLLDPSA LLPCFVVICK  360
P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418763.10.0PREDICTED: uncharacterized protein LOC103998881
TrEMBLM0U3790.0M0U379_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P24720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-127C2H2 family protein