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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P23320_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 226aa MW: 26002.1 Da PI: 9.8443 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.8 | 3.4e-30 | 103 | 154 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr+rWt++LH +Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQk+ GSMUA_Achr9P23320_001 103 PRMRWTTTLHGCFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQKF 154 9**************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-16 | 100 | 158 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 101 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-23 | 103 | 156 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-5 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDIFPSQPDL SLRISPPNTK PISDWRKQDG DTELGGVPVY QQPPSFPLLP PDHHHHHHHH 60 QQQQHLYESS SSTDFDRSAP TQSLSRSSNS PSRIPIKRRM RAPRMRWTTT LHGCFVHAVE 120 LLGGHERATP KSVLELMDVK DLTLAHVKSH LQKFFRLTSS KFMNMYRTVK NTQRPTVASG 180 RSDGFQNEWS AEISDERLLK IHDLHTSEFS THHEINQIGL WNSSSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-15 | 104 | 154 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018686769.1 | 1e-110 | PREDICTED: probable transcription factor KAN2 isoform X1 | ||||
Swissprot | Q9C616 | 1e-37 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | M0U2U1 | 1e-166 | M0U2U1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P23320_001 | 1e-166 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4721 | 36 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 2e-37 | G2-like family protein |
Publications ? help Back to Top | |||
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