PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P22640_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 338aa MW: 36932.8 Da PI: 8.794

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P22640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3.1e-09	7	27	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +ff++tG CkyG +Ck++H++ GSMUA_Achr9P22640_001 7 QFFLKTGSCKYGITCKYHHPR 27 59*****************96 PP
2	zf-CCCH	40.7	3.8e-13	47	72	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tG CkyG CkF+H++ GSMUA_Achr9P22640_001 47 DEKPCAYYMKTGSCKYGVACKFNHPQ 72 5789********************97 PP
3	zf-CCCH	40.8	3.8e-13	187	212	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG CkyG++Ck++H++ GSMUA_Achr9P22640_001 187 DQPECQFYMKTGNCKYGSSCKYHHPK 212 689*********************96 PP
4	zf-CCCH	34.6	3.3e-11	231	256	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f+a++G C+yG CkF H+ GSMUA_Achr9P22640_001 231 PGQPVCTFYAAYGSCNYGTACKFDHP 256 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.29	4	27	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.061	7	28	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.2E-7	7	27	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.14E-6	45	73	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.018	45	73	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-5	47	72	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.5E-11	47	72	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-6	49	71	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.727	185	213	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	185	212	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-10	187	212	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-6	188	214	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.0E-6	191	213	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-6	229	256	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-6	230	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.624	230	258	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-8	232	256	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-4	235	255	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSQLFLQFFL KTGSCKYGIT CKYHHPRDKH EIHMVQLNVL GLPIRKDEKP CAYYMKTGSC 60 KYGVACKFNH PQPASRGSSF PVTGSSVYDY SGYMAPTSGP HVSGGISQWH LSRIPYMSNP 120 TTQGLPAYVP LVLPPSQGTI PVPQGWISYM GSTNHISSTD MPAPGLTAKH QEQPGPGVPL 180 SLPERPDQPE CQFYMKTGNC KYGSSCKYHH PKERNQPAMA TIGPLGLPLR PGQPVCTFYA 240 AYGSCNYGTA CKFDHPLVGY YGYSLPPFTY PGQPALFPNQ RSLQVIWTSA GNSSSKSSNL 300 PDQLAISEKG GAQQNPQTHE HGNPTKNTLN NESLSESP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418524.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q2R4J4	4e-69	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	M0U2M3	0.0	M0U2M3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P22640_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-59	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]