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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P22540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 363aa MW: 39889.3 Da PI: 5.721 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.6 | 1e-10 | 148 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt.aeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg t + +a+++a+ k++g GSMUA_Achr9P22540_001 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGIALTfRDCSSRAYDRAAIKFRG 198 78*******************......55******9888577999999999999887 PP | |||||||
2 | AP2 | 38.4 | 3.1e-12 | 241 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV +k +g+W+A+ g +k+++lg f+t+ eAa+a++ a+ k +g GSMUA_Achr9P22540_001 241 SKFRGVILRK-SGKWEAR---M---GqilGKKYVYLGLFDTEIEAARAYDTAAIKCNG 291 79****9999.7******...4...333236**********99**********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-8 | 148 | 207 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 11.746 | 149 | 206 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-9 | 149 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.18E-14 | 149 | 206 | No hit | No description |
SMART | SM00380 | 4.4E-18 | 149 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-16 | 241 | 300 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.74E-22 | 241 | 299 | No hit | No description |
Pfam | PF00847 | 1.8E-8 | 241 | 291 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-17 | 242 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.712 | 242 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 242 | 305 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-6 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MVGGWDLNDA VSEEDSCCLM ASAPAEDGGD DEKGKPAATS SGEVENDDSG TSVVDVEAFG 60 GSAGKVFEFS VSGRRSVQSG PTVATHQFFP LGHSEGARAG GSSAPPSPRV HWTGDGFWQS 120 SEPVVAGMAT EAQPPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGIALT 180 FRDCSSRAYD RAAIKFRGVD ADINFRLDDY EEDIQQMGNL NKEDFIQVLR RQSGSFPRGS 240 SKFRGVILRK SGKWEARMGQ ILGKKYVYLG LFDTEIEAAR AYDTAAIKCN GKDAITNFDP 300 KLYSNELGIE TDHVEHNLDL SLGRSGSKRI NLEMIDDESS SVVDQQFLIG SESERKHNMI 360 LKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009418515.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | P47927 | 1e-94 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | M0U2L3 | 0.0 | M0U2L3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P22540_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-96 | AP2 family protein |