PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P22300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 290aa    MW: 31956.7 Da    PI: 10.6092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P22300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09126173455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN ++  Lrel+P +    sk       L + +++IksLq
  GSMUA_Achr9P22300_001 126 SHSLAERARREKINARMKVLRELVPGC----SKISGTTLLLDEIINHIKSLQ 173
                            8*************************9....666777788999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.76E-8120177No hitNo description
SuperFamilySSF474595.5E-14120190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12122191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.608122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6126173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-6128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGSAKGRPVR PSSGVLLASD GSFSALLDLP SDQAVNLLHR LPDPNAVASS GEMRRLCLPP  60
RPKAELLDSA GLRLIAQRSA KRKEGEKSRG ESPAKKSKRR SEEGTACGKK LPCVHVRARR  120
GQATDSHSLA ERARREKINA RMKVLRELVP GCSKISGTTL LLDEIINHIK SLQCLIELLS  180
MRLAAANSRI SFSGPDSSSS VDCGWLTVNN ERSRRVGMEP IEWSSYGGRR QPQQHIWHIN  240
LVHPQQTSRA SEGETPTAPI MGPYSSSAIN LLLFPCQLIQ LKYYFNSRYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418484.10.0PREDICTED: transcription factor bHLH48
SwissprotQ8VZ022e-40BH048_ARATH; Transcription factor bHLH48
TrEMBLM0U2I90.0M0U2I9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P22300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-40bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]