PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 368aa    MW: 39826.1 Da    PI: 8.0843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-06243267327
                            HHHHHHHHHHHHHHHHHHHHHHCTS CS
                    HLH   3 rahnerErrRRdriNsafeeLrell 27 
                            ++h e+Er+RR+++N++f  Lr++l
  GSMUA_Achr9P20820_001 243 ASHVEAERQRREKLNHRFYALRSVL 267
                            589*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-3223173IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.74E-6239273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.48E-6239275No hitNo description
PROSITE profilePS508888.943240296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-6243270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDELIISPSS SSSCLHQPTA TALQHRLQRL LDARPEWWAY AIFWRASPDH RLLSFADGHF  60
RGARSVADRR SGADAVDDAE WFYAVSLSRS FVVAGDATAV AAVPARVYSS LAPVWLAGAH  120
ALQACGCDRT REAQLHGIET LACVQVPGGV LELGSTDIIG ENWVVMQQAK AVFSTLPHDA  180
ALATGTAPTI ATAPSPAVRK DGAGHSSSVD SGHSDSDGGL TVEHRRPKKR GRKTVSGTRE  240
APASHVEAER QRREKLNHRF YALRSVLKAK VDKLEAEGKP AMKEITAAME VEVKLLGAEA  300
LIRVQSEDRG HPSARLMAAL RDLELRVHHA SVSSLEQVVL QDVVAKVPTE LQREDGLRAA  360
LLARLDKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-23171743193Transcription factor MYC3
4rqw_B3e-23171743193Transcription factor MYC3
4rs9_A3e-23171743193Transcription factor MYC3
4yz6_A3e-23171743193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224232RRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686912.10.0PREDICTED: transcription factor MYC4-like
TrEMBLM0U2410.0M0U241_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-43bHLH family protein