PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P18520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 306aa    MW: 33369.8 Da    PI: 9.4563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P18520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-0924601555
                           HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           ri ++f+ Lr+l+P+     ++K +Ka+ L +++eYI+ Lq
  GSMUA_Achr9P18520_001 24 RIQQKFQILRQLIPHG----DQKRDKASFLLEVIEYIRFLQ 60
                           7999***********7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.842959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-82464No hitNo description
SuperFamilySSF474595.1E-112475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-132467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-72460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQFPGYIGCY IIFGSLQNNN MWLRIQQKFQ ILRQLIPHGD QKRDKASFLL EVIEYIRFLQ  60
EKVQKYELPY SGWNQDGVKL MPWKNNQAPG IGLAIENNSA SPAHIFLKKS SEGSTPVAPP  120
MLSSVHVSPA TGVAAGNSYK IATSLASNLG TANNSSHQRL LAVGREAGVA QSQQGLISNP  180
DTMVFQDRPP WLRSCSLTGG AIGRDVMNEQ EELTVDEGMI SMSTAYSHGL LNTLSQALQS  240
SGVDLSQASV SVQINLGKRA INSRPTGTAT TSILKDQKDS TPFYQAIGYS RLGESQALKR  300
HKAENS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418036.20.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLM0U1F90.0M0U1F9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P18520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-42BES1-interacting Myc-like protein 2