PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P17630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 456aa    MW: 49088.1 Da    PI: 8.8075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P17630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-121844127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C +++rtGtC+yG++C+++H++
  GSMUA_Achr9P17630_001 18 PGEPDCAYYMRTGTCSYGEKCRYNHPR 44
                           5789*********************96 PP
2zf-CCCH37.44.1e-126892327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           ++ C +++rtG Ck+G++Ck+ H++
  GSMUA_Achr9P17630_001 68 QPVCEYYMRTGSCKFGSSCKYDHPR 92
                           689********************96 PP
3zf-CCCH38.81.6e-12113138227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C ++++tG+Ck+G++CkF+H++
  GSMUA_Achr9P17630_001 113 GEKECGYYMKTGQCKFGSTCKFHHPQ 138
                            7899********************97 PP
4zf-CCCH39.68.8e-13281307127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+ff++tG Ck+G++Ck++H+p
  GSMUA_Achr9P17630_001 281 PGQPECQFFMKTGDCKFGAKCKYHHPP 307
                            5789*********************97 PP
5zf-CCCH30.46.6e-10330352426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +C ++++ G Ck+G +CkF H+
  GSMUA_Achr9P17630_001 330 QPCTYYMQHGLCKFGQTCKFDHP 352
                            69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.5631745IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-61744IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-101944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-62245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-52344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6576593IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-66592IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-66692IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-106892IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-57092IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971111139IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5111138IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10113138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704280308IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-7280307IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5284308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4286306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342326354IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5326353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6329354IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7330352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4330351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MWRLGFGGGG DAHYPERPGE PDCAYYMRTG TCSYGEKCRY NHPRDRGSVR LTGAGRTGAV  60
EYPERVGQPV CEYYMRTGSC KFGSSCKYDH PRQGGGSAQP VSLNYYGYPL RPGEKECGYY  120
MKTGQCKFGS TCKFHHPQPG GASVPSASAP AFYPSVQHPS VPSSHQYPPY AGWQVARPSV  180
MPGSYLQGSY APMLLSHGVV PVQSWSPYPM SSFVALHTSQ ASVNPVLSPA GQQTIQAEPI  240
YGLENQASSI NPALPVPQMP SLSPAGPSST NQRGNIFPER PGQPECQFFM KTGDCKFGAK  300
CKYHHPPGRR MPMTNVVLNV LGLPLRPGAQ PCTYYMQHGL CKFGQTCKFD HPVATISYSP  360
SASSLSDMPV APYPIGSSVA TLAPSSSSSE LQPEFISTKE HFSSRMPPEN RSSSSIGSIF  420
STGGFLPHSF IQPQTSTSRS SSSSSPVPGN DISGSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417930.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like
SwissprotQ5NAW21e-165C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLM0U1700.0M0U170_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P17630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-134C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]