PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P15780_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BBR-BPC

Protein Properties

Length: 225aa MW: 24832.4 Da PI: 9.378

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P15780_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	242.2	3.5e-74	100	225	176	301
GAGA_bind 176 kkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263 k+++++++ ++ ++ ++s+ l++ng++lD s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt +S++PLP+stkrrgaRiagrKmSqg GSMUA_Achr9P15780_001 100 KDESSSRMGHQGRNLRQSTALNINGIDLDVSNIPTPLCSCTGMPHQCYRWGAGGWQSACCTTGVSMHPLPMSTKRRGARIAGRKMSQG 187 3333444457899************************************************************************* PP GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 afkk+L+ Laa Gy+ls p+DLk +WAkHGtnkfvtir GSMUA_Achr9P15780_001 188 AFKKVLANLAAKGYNLSDPIDLKPYWAKHGTNKFVTIR 225 ***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	4.0E-6	1	92	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.9E-87	1	225	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.0E-72	98	225	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDDDGGMGMR NWAYFDQTLK GDSGRHLMPS MAAECGAPKP PFLSNGAFHR RECFIPEQPD 60 RMDITRNEWI NLRENNMLHM LPLNNCSSAM GDAGKVAVSK DESSSRMGHQ GRNLRQSTAL 120 NINGIDLDVS NIPTPLCSCT GMPHQCYRWG AGGWQSACCT TGVSMHPLPM STKRRGARIA 180 GRKMSQGAFK KVLANLAAKG YNLSDPIDLK PYWAKHGTNK FVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417669.1	1e-155	PREDICTED: protein Barley B recombinant-like
Refseq	XP_009417671.1	1e-155	PREDICTED: protein Barley B recombinant-like
Refseq	XP_018686843.1	1e-155	PREDICTED: protein Barley B recombinant-like
Swissprot	P0DH88	2e-59	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	2e-59	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	M0U0N5	1e-169	M0U0N5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P15780_001	1e-170	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	5e-62	basic pentacysteine 2

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]