PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P15180_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 294aa MW: 32862.5 Da PI: 7.2375 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.2 | 4.3e-28 | 66 | 116 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA ELSvLCda+va+i+fsstgkl+e++s GSMUA_Achr9P15180_001 66 KKIDNTAARQVTFSKRRRGLFKKAAELSVLCDADVALIVFSSTGKLFEFCS 116 68***********************************************96 PP | |||||||
2 | K-box | 51.2 | 5.6e-18 | 144 | 225 | 16 | 97 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +l++++ Lkk++ + ++R++ Ge LesL+l+eLqqLe+ Le++l ++ ++K +++qi++lq+k +l een +Lr++ GSMUA_Achr9P15180_001 144 NLDNKHVSLKKQVAEASLQLRQMRGEALESLTLEELQQLEKTLETGLDRVVDRKGTQIMQQISTLQQKALQLAEENVRLRQR 225 67788999***********************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-39 | 58 | 117 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.576 | 58 | 118 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-31 | 60 | 133 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-27 | 60 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 60 | 114 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.50E-40 | 60 | 134 | No hit | No description |
Pfam | PF00319 | 9.8E-26 | 67 | 114 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-27 | 80 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-27 | 95 | 116 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.177 | 142 | 233 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-15 | 144 | 225 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MIAEHSLSSH LSHPSSLQYC WQTDEEQSRV SLSSGCPWII LPSIVSYCIL KTAGGETMVR 60 EKIQIKKIDN TAARQVTFSK RRRGLFKKAA ELSVLCDADV ALIVFSSTGK LFEFCSSSMK 120 KILDKHSTHS KNLEKQDQLS LDLNLDNKHV SLKKQVAEAS LQLRQMRGEA LESLTLEELQ 180 QLEKTLETGL DRVVDRKGTQ IMQQISTLQQ KALQLAEENV RLRQRGVQAM EMPNLGKHIM 240 AEKENVVNED GQSSESVTNA LHPGGPQECD DSSVTSLKLG YVNEVNICYP AIKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 5e-20 | 58 | 130 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417612.1 | 1e-155 | PREDICTED: MADS-box protein SVP | ||||
Refseq | XP_009417613.1 | 1e-155 | PREDICTED: MADS-box protein SVP | ||||
Swissprot | Q9FVC1 | 3e-86 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | M0U0H6 | 0.0 | M0U0H6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P15180_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-70 | MIKC_MADS family protein |