PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31822.1 Da PI: 6.6088

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P14960_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	13	66	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++ ql++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa+ k GSMUA_Achr9P14960_001 13 KKRRLSAAQLRALERSFEVENKLEPERKLRLAQQLGLQPRQVAVWFQNRRARCK 66 45689***********************************************99 PP
2	HD-ZIP_I/II	123.1	1.3e-39	12	103	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls+ q+++LE+sFe e+kLeperK +la++LglqprqvavWFqnrRAR ktkqlE+dy+aL ++ydal+ + ++L++++e+L GSMUA_Achr9P14960_001 12 EKKRRLSAAQLRALERSFEVENKLEPERKLRLAQQLGLQPRQVAVWFQNRRARCKTKQLERDYAALEANYDALRLDYDSLRRDKESLL 99 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +++ GSMUA_Achr9P14960_001 100 TQIG 103 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.135	8	68	IPR001356	Homeobox domain
SMART	SM00389	2.8E-18	11	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-19	12	70	IPR009057	Homeodomain-like
CDD	cd00086	1.43E-16	13	69	No hit	No description
Pfam	PF00046	7.7E-16	13	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-19	15	75	IPR009057	Homeodomain-like
PRINTS	PR00031	1.7E-5	39	48	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	43	66	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	48	64	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.6E-16	68	109	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MVEDDEAAVQ GEKKRRLSAA QLRALERSFE VENKLEPERK LRLAQQLGLQ PRQVAVWFQN 60 RRARCKTKQL ERDYAALEAN YDALRLDYDS LRRDKESLLT QIGELKAKLS SGEQRLSFSS 120 VKKEPVVSEA EAKAAPPSSS EKDPAALFYK DGSSESDSSA VLNDENIPRR GKPSSMDAVR 180 PLPTAAETIS APLFLDPDHL SGAIKEEGSL HHQHHHMLMM EEEEPFISFF SDDQPPILNC 240 RVCNVINIYF LKLKLHVFIF ISTLVIHPSL FLSHKTNPST W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	68	RRARCKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417594.1	1e-172	PREDICTED: homeobox-leucine zipper protein HOX4-like
Refseq	XP_009417595.1	1e-172	PREDICTED: homeobox-leucine zipper protein HOX4-like
Refseq	XP_018686914.1	1e-172	PREDICTED: homeobox-leucine zipper protein HOX4-like
Swissprot	A2YWC0	4e-59	HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
Swissprot	Q6Z248	4e-59	HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBL	M0U0F4	0.0	M0U0F4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P14960_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	1e-44	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]