PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P10040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 304aa    MW: 35061.2 Da    PI: 5.7905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P10040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51301582128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                             pGfrFhPtdeelv +yL++kve+k +++ e+i+e+diyk++PwdLpk v+a+ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d
  GSMUA_Achr9P10040_001  30 LPGFRFHPTDEELVGFYLRRKVEKKCFSI-EIIREIDIYKHDPWDLPKVVSAREKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGID 116
                            69***************************.89***************99999************************************ PP

                    NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++++s+   +ge +glkk+Lv+y+g+a kg+ktdW+mheyrl
  GSMUA_Achr9P10040_001 117 RPIYSAkdpGGECIGLKKSLVYYRGSAGKGTKTDWMMHEYRL 158
                            *****98888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5627184IPR003441NAC domain
PROSITE profilePS5100554.11129184IPR003441NAC domain
PfamPF023657.4E-2631158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEERREKSGE QQVRVVEEEE EEAAEDDPVL PGFRFHPTDE ELVGFYLRRK VEKKCFSIEI  60
IREIDIYKHD PWDLPKVVSA REKEWYFFCL RGRKYRNSIR PNRVTGSGFW KATGIDRPIY  120
SAKDPGGECI GLKKSLVYYR GSAGKGTKTD WMMHEYRLPC KNSDTATPSI HEAEIWTICR  180
IFKRNTFKKS WKQSNNVKLP TDSSSKSSSF ESDDGGNEFK FLASSSYLNE EEMKYVGNCF  240
AENEQIYGSQ WNSMAQAPTP TLHSDVVSTT PSVNDFFRDG NWDELGRIVG FMTDQSVASC  300
CQYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-49251868167NO APICAL MERISTEM PROTEIN
1ut4_B9e-49251868167NO APICAL MERISTEM PROTEIN
1ut7_A9e-49251868167NO APICAL MERISTEM PROTEIN
1ut7_B9e-49251868167NO APICAL MERISTEM PROTEIN
4dul_A9e-49251868167NAC domain-containing protein 19
4dul_B9e-49251868167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416768.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM0TZ130.0M0TZ13_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P10040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-83NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]