PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P09370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 276aa    MW: 30198 Da    PI: 9.044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P09370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-051840123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C++sF++  +L  H+r+H
  GSMUA_Achr9P09370_001 18 HRCKVCSRSFPSGRSLGGHMRSH 40
                           79********************9 PP
2zf-C2H212.60.000414463221
                           EETTTTEEESSHHHHHHHHH CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                           +C+ Cgk F ++  L  H+r
  GSMUA_Achr9P09370_001 44 QCKECGKEFLSWRALFGHMR 63
                           7******************8 PP
3zf-C2H214.10.00014205227123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp+C+k Fs+   L  H r+H
  GSMUA_Achr9P09370_001 205 HRCPICSKFFSSGQALGGHKRSH 227
                            79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.43E-91865No hitNo description
PROSITE profilePS501579.8891845IPR007087Zinc finger, C2H2
PfamPF139122.9E-101840IPR007087Zinc finger, C2H2
SMARTSM003550.00531840IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
SMARTSM003550.00324365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4294370IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-54471IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.0E-64467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-5163228No hitNo description
PROSITE profilePS501579.868165192IPR007087Zinc finger, C2H2
PfamPF139126.7E-10165188IPR007087Zinc finger, C2H2
SMARTSM003551.5165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
PfamPF139121.6E-10205227IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702205227IPR007087Zinc finger, C2H2
SMARTSM003550.031205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEGDRLTPAP GLLPLSKHRC KVCSRSFPSG RSLGGHMRSH VNVQCKECGK EFLSWRALFG  60
HMRCHSERPY EERGERDGSC SNAGHCNSLE NQFDSEAAAA TPEDEDGAIS LVLLSKGQDL  120
SSAVTEPSMK PGFDASGVRL GKNSSSTLER SDGCSDKTTK KRSWFDCKPC NKVFRSYQAL  180
GGHRARHKRM KGCHGHRLHG STKGHRCPIC SKFFSSGQAL GGHKRSHLVA NTACPVVIPR  240
QPFKMSQLLD LNLPANGSDD YGGRESTSST SYCFIH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416826.11e-162PREDICTED: zinc finger protein ZAT3-like
TrEMBLM0TYU60.0M0TYU6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P09370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-33C2H2-like zinc finger protein