PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P08780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 302aa    MW: 32750.9 Da    PI: 7.5882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P08780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-1393140455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h   Er RR+++++ f+ L  llP++     +K +K++i+ +Av+YIk Lq
  GSMUA_Achr9P08780_001  93 MHIWTERERRKKMRNMFSSLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 140
                            56678*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.25389139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1690155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-1592144No hitNo description
Gene3DG3DSA:4.10.280.105.6E-1692152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1094140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-997145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.75E-4226259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSRRAAAGGE GDGGGGADRV GLGHDDQHWI FSNTENSDGG CNVKVAATRA PDRSCSNSPP  60
GPVPLMGEKR AHNGASKGSS EGKGGVGESD HEMHIWTERE RRKKMRNMFS SLHALLPQLP  120
PKADKSTIVD EAVNYIKTLQ QNLQKLQKKK QERTGGVVYD EPSSAAALQS QASDTNREAF  180
LADHGKFWPA AMNSPTAVSV TRFPQSFQTW SSPNVVLSVT GEDAHISVCT SRKPGLFSTI  240
LCVMEKHKLE VVSATISSDC FRSMFMIHAR ATGASDQFPE TLMIEEIYKL AVGEMILWLS  300
SC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417036.21e-156PREDICTED: transcription factor bHLH95
TrEMBLM0TYN70.0M0TYN7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P08780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-40bHLH family protein