PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P07330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 362aa    MW: 38443 Da    PI: 9.4001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P07330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10268316355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++h+ +Er RR++i +++  L++l+P +    sk   Ka +L ++++Y++ Lq
  GSMUA_Achr9P07330_001 268 ASHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDETINYVQALQ 316
                            68*************************9....556****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-18262334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-12263320No hitNo description
PROSITE profilePS5088816.056265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17265333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7268316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MYSGSDGDQL PHSYLSLSWG QPMCHCRDTH LESALSSLVS SPSSSTPAGN ETVSANNTSC  60
YRTPLDSPPK LILSTMGHQQ QGRAPLPMPG NQTAAEQFAP FTADSGFAER AARLSYFGAT  120
SGGGLGAQVG LAEAVKLSRV SSSQSLMAAS RQQMGASNSG KEAPMTDAER SKTETRLKLG  180
GRTSGSSTPD ESSSMSDRMT TSSAETNSRK RKSAPKGAPL TSSNTNPLKV SETNATAVEP  240
KKQNNSAKPS ESPKDYIHVR ARRGQATASH SLAERVRREK ISERMKLLQD LVPGCSKVTG  300
KAVMLDETIN YVQALQRQVE FLSMKLATLN PQLDFSCAQQ PLGIPLESMV ANGSDVHGSL  360
FG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416595.10.0PREDICTED: transcription factor bHLH78-like
TrEMBLM0TY920.0M0TY92_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P07330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-51bHLH family protein