PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P06650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 367aa    MW: 40861.2 Da    PI: 8.7919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P06650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-052949323
                           ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                           C++Cgk F r  nL+ H r H
  GSMUA_Achr9P06650_001 29 CEICGKGFQRDQNLQLHRRGH 49
                           *******************88 PP
2zf-C2H211.90.0007133151523
                            TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                            dCg++Fsr++++ +H   +
  GSMUA_Achr9P06650_001 133 DCGTVFSRRDSFITHRAFC 151
                            9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-52649IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.55E-62649No hitNo description
PROSITE profilePS5015711.4892749IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-491124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.55E-698123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAGEAISDPE AEVIALSPKT LLATNRFLCE ICGKGFQRDQ NLQLHRRGHN LPWKLRQRTS  60
KEPRKRVYVC PEKSCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDCKA  120
HSKTCGTREY RCDCGTVFSR RDSFITHRAF CDALAEESAR VAASNMSRLT SICNGNFSFT  180
RDLMRSNIAH DFSGAISNTT MTESEMLSSI YSDELTSVAL PTSSMKETES PHSLLLKVPS  240
RYSTQHQNQH QQMAMAPDVS ATALLQKAAL IGVNASCATP LSSFETKSRE SNFRYLSNSS  300
LLDMNHPSLA TLSGNTMDNS TLPNPLTTVY STRHLMIQKG DERGGETRDF LGVDAPTICA  360
SSWNGWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3399163367Zinc finger protein JACKDAW
5b3h_F3e-3399163367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416535.10.0PREDICTED: zinc finger protein MAGPIE
TrEMBLM0TY240.0M0TY24_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P06650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-111C2H2 family protein