PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P06430_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 154aa MW: 16904.2 Da PI: 9.6532 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.1 | 2.5e-35 | 38 | 96 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal.rnvPvGggrrknkk 60 +al+cprC+s++t+fCy+nny+++qPr+fCkaC+ryWt+GG+l rnvPvG+grr+ + GSMUA_Achr9P06430_001 38 AAALSCPRCKSKETRFCYFNNYNVNQPRHFCKACHRYWTAGGTLrRNVPVGAGRRRGRP 96 56799***************************************55*********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.2E-29 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.546 | 41 | 96 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-16 | 41 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAQVEEAVSF KLFGTVIQKG DRQAKEEEEK RVEAQEEAAA LSCPRCKSKE TRFCYFNNYN 60 VNQPRHFCKA CHRYWTAGGT LRRNVPVGAG RRRGRPAHRI GASSAAAATA VIPSVCVLVC 120 QPSGYSDGAA AMDRWLLTPD APAIVDRRHS GGPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ969263 | 3e-44 | AJ969263.1 Hordeum vulgare dof17 gene for dof zinc finger protein 17, cultivated variety Bomi. | |||
GenBank | AK360617 | 3e-44 | AK360617.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121P17. | |||
GenBank | AK365055 | 3e-44 | AK365055.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030J14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416510.1 | 1e-112 | PREDICTED: cyclic dof factor 4-like | ||||
Swissprot | O22967 | 4e-34 | CDF4_ARATH; Cyclic dof factor 4 | ||||
TrEMBL | M0TY02 | 1e-110 | M0TY02_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P06430_001 | 1e-111 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 6e-24 | Dof family protein |
Publications ? help Back to Top | |||
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