![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr9P05860_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26309 Da PI: 5.0313 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa+++ +g GSMUA_Achr9P05860_001 55 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDAAALCVKG 105 68*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-13 | 55 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 56 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-32 | 56 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-19 | 56 | 116 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.537 | 56 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.31E-18 | 57 | 118 | No hit | No description |
PRINTS | PR00367 | 4.3E-10 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MSPMADQIKW ASSESETSAT SSSSSSSSGS SSSRRSSGGA ATEQRKRERD SRRHPVYRGV 60 RMRAWGKWVS EIREPRKKSR IWLGTFATPE MAARAHDAAA LCVKGPSAAA AILNFPNLAG 120 TLPRPASLSP RDVREAAARA AAMDPASPGS AASSPSPSSS PEEKLAAAPT DELGEIVELP 180 RLGEELFDSA ALEGDFIFHD TEDLWTYPQP WAESKGDHEF FPDPIWSQEV NASTGLEAPF 240 WDFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 54 | 117 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416449.1 | 1e-173 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 2e-61 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M0TXU5 | 1e-172 | M0TXU5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P05860_001 | 1e-172 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-54 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|